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Electronic Journal of Biotechnology ISSN: 0717-3458
  © 2010 by Universidad Católica de Valparaíso -- Chile
Vol. 13 No. 3, Issue of May 15, 2010
 

Table 3. Details of SSR markers used, indicating their location on rice chromosomes, number of alleles detected, allele size range and polymorphism information content (PIC).



Marker

Chromosome

SSR motifs

Total alleles

Polymorphic alleles

Size range (bp)

Difference

PIC value

RM1

1

(GA)26

5

5

75 - 135

60

0.678

RM10

2

(GA)15

2

2

142 - 159

17

0.124

RM13

5

(GA)16

2

2

130 - 150

20

0.336

RM16

3

(GA)15

3

3

165 - 187

22

0.256

RM17

12

(GA)21

3

3

160 - 185

15

0.395

RM19

4

(ATC)10

2

2

192 - 252

60

0.191

RM44

8

(GA)16

4

4

100 - 125

25

0.373

RM55

5

(GA)17

2

2

216 - 247

31

0.468

RM60

3

(AATT)5AATCT(AATT)

2

2

162 - 176

14

0.394

RM70

7

(ATT)33

13

13

128 - 167

39

0.800

RM72

8

(TAT)5C(ATT)15

6

6

151 - 200

49

0.726

RM110

2

(GA)15

5

5

138 - 159

21

0.731

RM122

5

(GA)11

5

5

229 - 240

11

0.757

RM163

5

(GGAGA)4(GA)11C(GA)20

9

9

130 - 175

45

0.836

RM170

6

(CCT)7

4

4

99 - 119

20

0.654

RM182

7

(AT)16

8

8

328 - 349

21

0.833

RM201

9

(CT)17

4

4

144 - 159

15

0.540

RM202

11

(GA)30

5

5

161 - 190

29

0.735

RM222

10

(CT)18

3

3

199 - 225

26

0.545

RM223

8

(GA)25

4

4

140 - 170

30

0.623

RM224

11

(GA)13

4

4

118 - 157

39

0.662

RM234

7

(GA)25

3

3

133 - 163

30

0.633

RM241

4

(CT)31

5

5

104 - 149

45

0.831

RM242

9

(CT)26

3

3

197 - 255

58

0.444

RM252

4

(GA)19

9

9

194 - 262

68

0.738

RM253

6

(GA)25

4

3

117 - 146

29

0.434

RM257

9

(CT)24

3

3

132 - 147

15

0.653

RM263

2

(CT)34

5

5

162 - 199

37

0.374

RM302

1

(GT)30(AT)8

6

6

120 - 191

71

0.623

RM310

8

(GT)19

5

5

87 - 123

36

0.766

RM333

10

(TAT)19(CTT)19

4

4

166 - 196

30

0.629

RM348

4

(CAG)7

3

3

131 - 143

12

0.422

Total

 

 

145

142

 

 

 

Average

 

 

4.53

4.44

 

 

0.569

 


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